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| 4/2004-Present |
Project Manager, Senior Bioinformatics Developer III
Cold Spring Harbor Laboratory. Advisor:
Dr. Lincoln Stein. Bioinformatics, user-interface development, data analysis and visualization |
| 2/2001-4/2004 |
Postdoctoral Fellow,
Cold Spring Harbor Laboratory. Advisor:
Dr. Lincoln Stein. Bioinformatics, functional and comparative genomics |
| 7/1993-12/2000 |
Graduate Student, University of Utah. Advisor: Dr Erik Jorgensen. Genetic analysis of synaptic vesicle trafficking |
| 1991-1992 |
Colorado College. Advisor: Dr Ken Andrews. Thermophilic microbes of Yellowstone National Park |
| 1993-2000 | University of Utah, Salt Lake City, Utah. Department of Biology. PhD 12/2000 |
| 1988-1992 | Colorado College, Colorado Springs, Colorado. Bachelor of Arts 5/1992, Biology |
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WormBase 2007.
Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Auken KV, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. 2008. Nucleic Acids Research:doi:10.1093/nar/gkm975. |
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WormBase: new content and better access
Bieri T, Blaisir D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen W, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Muller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J. 2007. Nucleic Acids Research:doi:10.1093/nar/gkl818. |
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WormBook: the online review of Caenorhabditis elegans biology
Girard L, Fiedler TJ, Harris TW, Carvalho F, Antoshechkin I, Han M, Sternberg PW, Stein LD, Chalfie M. 2007. Nucleic Acids Research:doi:10.1093/nar/gkl894. |
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Comparative genomics in C. elegans, C. briggsae and other Caenorhabditis species
Coghlan A, Stajich JE, and Harris TW. 2006. In: C. elegans: Methods And Applications. Ed. Kevin Strange. Humana Press. |
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WormBase: methods for data mining and comparative genomics
Harris TW and Stein LD. 2006. In: C. elegans: Methods And Applications. Ed. Kevin Strange. Humana Press. |
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WormBase: better software richer content
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Spooner W, Tuli MA, Van Auken K, Wang D, Durbin R, Spieth J, Stein LD and Sternberg PW. 2006. Nucleic Acids Research 34:D475-D478. |
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WormBase: a Comprehensive Data Resource for Caenorhabditis Biology and Genomics
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T , Blasiar D, Bradnam K, Canaran P, Chan J, Chen C, Chen WJ, Davis P , Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S , Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM , Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW , and Stein LD. 2005. Nucleic Acids Research 33:D383-D389. |
abstract | |
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WormBase as an integrated platform for the C. elegans ORFeome
Chen N, Lawson D, Bradnam K, Harris TW, Stein LD 2004. Genome Res. 10B:2155-2161 |
abstract | |
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WormBase: A multi-species resource for nematode biology and genomics
Harris TW, Chen N, Cunnigham F, Tello-Ruiz M, Antoshechkin I, Bastiani C , Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P , Kenny E, Kishore R, Lawson D, Lee R, Nakamura C, Ozersky P, Petcherski A , Rogers A, Sabo A, Schwarz EM, VanAuken K, Wang Q, Durbin R , Spieth J, Sternberg P, and Stein LD. 2004. Nucleic Acids Res. 31: 411-417. |
abstract | |
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The Genome Sequence of Caenorhabditis briggsae: A
Platform for Comparative Genomics.
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent M, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fulton L, Fulton R, Griffiths-Jones S, Harris T, Hillier L, Kamath R, Kuwabara P, Marra M, Mardis E, Miner T, Minx P, Mullikin JC, Plumb R, Rogers J, Schein J, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson R, Durbin R, Waterston R. 2003. 1(2): 166-192. |
abstract |
screen PDF print PDF |
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WormBase: A Cross-species database for comparative genomics.
Harris TW, Lee R, Schwarz E, Bradnam K, Lawson D, Chen W, Blasier D, Kenny E, Cunnigham F, Kishore R, Chan J, Muller HM, Petcherski A, Thorisson G, Day A, Bieri T, Rogers A, Chen C, Spieth J, Sternberg P, Durbin R, Stein LD. 2003. Nucleic Acids Res. 31: 133-137. |
abstract | |
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The Generic Genome Browser: A Building Block for a Model Organism System Database.
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich J, Harris TW, Arva A, Lewis S. 2002. Genome Research. 12(10) : 1599-1610. |
abstract | |
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Studies of Synaptic Vesicle Endocytosis in the Nematode C. elegans.
Harris TW, Schuske K, Jorgensen EM. 2001. Traffic. 2: 597-605. |
abstract | |
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Genetic Analysis of Synaptic Vesicle Trafficking.
Harris TW. 2000. Doctoral Thesis. (Thesis Defense: QuickTime) |
abstract | |
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Mutations in synaptojanin disrupt synaptic vesicle recycling.
Harris TW, Hartwieg E, Horvitz HR, Jorgensen EM. 2000. Journal of Cell Biology. 50: 589-600. |
abstract |
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Towards integrative, customizable displays for a model organism database.
Harris TW and Stein LD. 2008. Biology of Genomes, Cold Spring Harbor Laboratory, NY, USA |
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Exploring community annotation of a mature model organism database
Harris TW and Stein LD. 2007. Genome Informatics, Cold Spring Harbor Laboratory, NY, USA |
abstract | |
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Distributing and archiving genomic databases using virtualization technology
Harris TW and Stein LD. 2007. ISMB, Vienna, Austria |
abstract | |
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Your Own Private WormBase
Harris TW and Stein LD. 2007. 16th International C. elegans Meeting, UCLA, LA, CA, USA |
abstract | |
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nGASP - the nematode Genome Annotation Assessment Project
Fiedler TJ, Blasiar B, Coghlan A, Flicek P, Harris TW, McKay SJ, Stein LD. 2007. 16th International C. elegans Meeting, UCLA, LA, CA, USA |
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WormBook: The Online Review of C. elegans Biology and Resource for Experimental Methods
Girard L, Fiedler TJ, Harris TW, Wang D, Carvalho F, Antoshechkin I, Sternberg PW, Stein LD, Chalfie M. 2007. 16th International C. elegans Meeting, UCLA, LA, CA, USA |
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WormBase: Comparative Genomics
Han M, McKay S, Harris TW. 2007. 16th International C. elegans Meeting, UCLA, LA, CA, USA |
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WormBase, a highly curated resource of nematode biology
Harris TW, Canaran P, Chen J, Fiedler T, McKay S, Spooner W, Stein LD, and the WormBase Consortium 2006. Biology Of Genomes Meeting, Cold Spring Harbor Laboratory, NY |
abstract | |
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WormBase v2.0: A new face for WormBase
Harris TW, Canaran P and Stein LD. 2005. International C. elegans Meeting, UCLA. |
abstract | |
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Flexible access to WormBase: recent data mining enhancements
Harris TW and Stein LD. 2005. International C. elegans Meeting, UCLA. |
abstract | |
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Standard URLs for accessing common biological data
Harris TW. 2005. Spring 2005 Generic Model Organism Database Meeting, SRI, Menlo Park, CA |
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WormBase, A comprehensive resource for nematode comparative genomics
Harris TW, Chen J, Canaran P, McKay S, Spooner W and Stein LD. 2005. Genome Biology Meeting, Cold Spring Harbor Laboratory, NY |
abstract | |
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WormBase in the era of comparative genomics: Model
Organism Databases and the challenges of multiple
species
Harris TW, Stein LD, and the WormBase Consortium 2004. Genome Informatics Meeting, Cambridge, England. |
abstract | |
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WormBase, the central repository for C. elegans information: new datasets and features.
Harris TW and the WormBase Consortium 2004. East Asia C. elegans Meeting, Awaji Island, Japan. |
abstract | |
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The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics.
Stein LD, Bao Z, Brent M, Chen N, Clarke L, Clee C, Coghlan A, Coulson A, Durbin R, Griffiths-Jones S, Harris TW, Hillier L, Kuwabara P, Mullikin J, Plumb B, Rogers J, Sohrmann M, Stajich J, Waterston R, Willey D. 2003. 14th International C. elegans Meeting, UCLA. |
abstract | |
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Onwards and upwards: enhancements and improvements to WormBase.
The WormBase Consortium. 2003. 14th International C. elegans Meeting, UCLA. |
abstract | |
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Using synteny to study genome structure and stability.
Harris TW, Stajich JE, Chen, JN, Stein LD. 2003. 68TH Cold Spring Harbor Symposium - The Genome Of Homo sapiens, Cold Spring Harbor Laboratory. |
abstract | |
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Comparative analysis between olfactory receptor
subgenomes in the nematodes C. elegans and
C. briggsae.
Chen JN, Harris TW, Stajich JE, D'Eustachio P, Stein LD. 2003. Genome Informatics Meeting, Cold Spring Harbor Laboratory. |
abstract | |
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Global synteny between C. elegans and C. briggsae.
Harris TW, Stajich J, Sohrmann M, Stein LD. 2002. West Coast C. elegans Meeting, UCSD. |
abstract | |
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WormBase, a growing source of worm information.
The WormBase Consortium. 2002. West Coast C. elegans Meeting, UCSD. |
abstract | |
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Wormbase, an integrated platform for functional genomics.
Harris TW, Stein LD. 2002. Genome Sequencing and Biology Meeting, Cold Spring Harbor Laboratory. |
abstract | |
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The Generic Genome Browser: A Building Block for a Model Organism System.
Stein LD, Day A, Harris T, Arva A, Shu S, Lewis S, Mungall C. 2002. Genome Sequencing and Biology Meeting, Cold Spring Harbor Laboratory. |
abstract | |
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WormBase: A Web-accessible database for C. elegans biology.
Sternberg P, Lawson D, Schwarz EM, Martinelli SD, Chen WJ, Mangone M, Blasiar D, Worthington R, Lee RY, Day A, Mueller H, Harris TW, Thierry-Mieg D, Thierry-Mieg J, Spieth J, Durbin R, Stein LD. 2001. 13th International C. elegans Meeting, UCLA. |
abstract | |
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Genetic Analysis Of Synaptic Vesicle Trafficking.
Harris, TW. 2000 Dec 20. Doctoral Thesis Defense. |
abstract | QuickTime |
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Cooperation between unc-26/synaptojanin and the
dynamin-related protein DRP-1 during mitochondrial
division.
Rube D, Harris TW, Jorgensen EM, Bliek AVD. 2000. West Coast C. elegans Meeting, UCLA. |
abstract | |
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Mutations in unc-26, the C. elegans synaptojanin
homolog, disrupt synaptic vesicle recycling and result
in defects in cytoskeletal organization.
Harris TW, Hartwieg E, Horvitz HR, Jorgensen EM. 1999. 12th International C. elegans Meeting, University of Wisconsin-Madison. |
abstract | |
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unc-26 mutants are defective in synaptic vesicle recycling.
Harris TW, Hartwieg E, Horvitz HR, Jorgensen EM. 1998. West Coast C. elegans Meeting, University of California-Berkeley. |
abstract | |
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unc-26 encodes a phosphatidylinositol phosphatase.
Harris TW, Jorgensen EM. 1997. 11th International C. elegans Meeting, University of Wisconsin-Madison. |
abstract | |
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Characterization of synaptic function mutants.
Harris TW, Jorgensen EM. 1996. West Coast C. elegans Meeting, University of British Columbia. |
abstract | |
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Cloning and characterization of the synaptic function mutant ric-1.
Harris TW, Jorgensen EM. 1995. 10th International C. elegans Meeting, University of Wisconsin-Madison. |
abstract |
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WormBase: Progress Report
Stein-Ware Lab Retreat, Cold Spring Harbor Lab, Cold Spring Harbor, NY, USA. 8 May 2006. |
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WormBase, an insider's guide to comparative genomics and data mining
Universitat Zurich, Zurich, Switzerland, April 19, 2006. |
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I. WormBase: A Multi-species Resource For Comparative Genomics
II. Tools for data mining C.elegans course, Cold Spring Harbor Laboratory, New York. August 1, 2004. |
QuickTime |
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WormBase: A Resource For The Biology And Genome Of C. elegans
C.elegans course, Cold Spring Harbor Laboratory, New York. July 26th, 2003. |
QuickTime |
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Genome Structure Through Comparative Genomics
C.elegans course, Cold Spring Harbor Laboratory, New York. July 26th, 2003. |
QuickTime |
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Bigger needles, smaller haystacks: Using comparative genomics to gain insight into genome structure and stability Gonzaga University, Spokane, Washington. January 27th, 2003. |
QuickTime |
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WormBase and The C. elegans Genome
C.elegans course, Cold Spring Harbor Laboratory, New York. July 27th, 2002. |
QuickTime |
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Single Nucleotide Polymorphisms: natural variance as a
fast track to determining gene function
Colorado College, Colorado Springs, Colorado. November 24th, 2001. |
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Phosphoinositides in synaptic vesicle trafficking
Hubrecht Institute of Developmental Biology, Utrecht, The Netherlands. May 16th, 2000. |
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Genetic analysis of synaptic vesicle trafficking
Colorado College, Colorado Springs, Colorado. December 18th, 1997. |
| 1997-2000 | National Institutes of Health Predoctoral Fellowship, Genetics |
| 1996-1998 | Huntsman Cancer Institute Research Award |
| 1992 | Mary Alice Hamilton Award for Distinction in Biology, Colorado College |
| November 2002 | Colorado College - Introduction to Bioinformatics |
| July 2002 | 4th Annual C. elegans Course, Cold Spring Harbor Laboratory, teaching assistant |
| November 1999 | 2nd Annual C. elegans Course, Cold Spring Harbor Laboratory, teaching assistant |
| November 1998 | Inaugural C. elegans Course, Cold Spring Harbor Laboratory, teaching assistant |
| Spring 1997 | Bio531: Eukaryotic Genetics Laboratory,teaching assistant |
| Spring 1995 | Bio101: Introductory Biology, teaching assistant |
| Winter 1992 | Bio300: Developmental Biology, teaching assistant |
| Spring 1992 | Bio460: Advanced Microbiology, lab assistant |
| Winter 1991 | Bio450: Molecular Biology, lab assistant |
| Spring 1991 | Bio350: Microbiology, teaching assistant |